If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ), 'gf_id' => 'HOM05D000639', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000639' ), 'data_identifier' => 'HOM05D000639', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000639', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08530' => 'bna', 'A01p34610' => 'bna', 'A01p34630' => 'bna', 'A02p10350' => 'bna', 'A02p37840' => 'bna', 'A03p37560' => 'bna', 'A03p58960' => 'bna', 'A05p37090' => 'bna', 'A05p41240' => 'bna', 'A06p38610' => 'bna', 'A07p01050' => 'bna', 'A07p06820' => 'bna', 'A08p19630' => 'bna', 'A10p11640' => 'bna', 'Aa31LG2G20970' => 'aar', 'Aa31LG3G6490' => 'aar', 'Aa31LG5G17500' => 'aar', 'Aa31LG5G9060' => 'aar', 'Aa31LG8G16650' => 'aar', 'Aa31LG8G6810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3515' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5150' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1615' => 'aag', 'Actinidia00024' => 'ach', 'Actinidia01464' => 'ach', 'Actinidia01517' => 'ach', 'Actinidia01687' => 'ach', 'Actinidia04360' => 'ach', 'Actinidia08474' => 'ach', 'Actinidia08477' => 'ach', 'Actinidia10146' => 'ach', 'Actinidia14303' => 'ach', 'Actinidia17338' => 'ach', 'Actinidia22012' => 'ach', 'Actinidia26410' => 'ach', 'Actinidia39731' => 'ach', 'Actinidia40256' => 'ach', 'Actinidia40445' => 'ach', 'Ah.01g011640' => 'amhyb', 'Ah.01g011660' => 'amhyb', 'Ah.04g164890' => 'amhyb', 'Ah.06g184080' => 'amhyb', 'Ah.06g184090' => 'amhyb', 'Ah.06g184100' => 'amhyb', 'Ah.10g029870' => 'amhyb', 'Ah.14g080820' => 'amhyb', 'Ah.14g086070' => 'amhyb', 'AL1G14590' => 'aly', 'AL3G18100' => 'aly', 'AL3G23930' => 'aly', 'AL3G33680' => 'aly', 'AL3G48570' => 'aly', 'AL7G22890' => 'aly', 'AL8G22390' => 'aly', 'Aqoxy1G00391' => 'aox', 'Aqoxy2G02982' => 'aox', 'Aqoxy3G04318' => 'aox', 'Aqoxy7G01263' => 'aox', 'Aqoxy7G02066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.395ZGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KUL4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94NDDX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC5VJY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H9Y2LD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP0LAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGP6YV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KA48HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LR2V9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M7LB9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P73KK2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA2Y9G' => 'arhy', 'AT1G04870' => 'ath', 'AT2G19670' => 'ath', 'AT3G06930' => 'ath', 'AT3G12270' => 'ath', 'AT3G20020' => 'ath', 'AT4G29510' => 'ath', 'AT5G49020' => 'ath', 'ATR0559G017' => 'atr', 'ATR0618G418' => 'atr', 'ATR0789G143' => 'atr', 'ATR0796G199' => 'atr', 'ATR0815G030' => 'atr', 'ATR1096G043' => 'atr', 'Atru.chr11.1261' => 'acertr', 'Atru.chr4.2839' => 'acertr', 'Atru.chr7.1233' => 'acertr', 'Atru.chr7.1543' => 'acertr', 'AUR62008114' => 'cqu', 'AUR62011074' => 'cqu', 'AUR62017743' => 'cqu', 'AUR62027449' => 'cqu', 'AUR62028692' => 'cqu', 'AUR62031251' => 'cqu', 'AUR62031686' => 'cqu', 'AUR62032569' => 'cqu', 'AUR62032912' => 'cqu', 'AUR62033456' => 'cqu', 'BcaB03g16750' => 'bca', 'BcaB04g18688' => 'bca', 'BcaB04g19076' => 'bca', 'BcaB05g22130' => 'bca', 'BcaB06g26073' => 'bca', 'BcaB07g34210' => 'bca', 'BcaB07g34211' => 'bca', 'BcaB08g35791' => 'bca', 'BcaB08g35792' => 'bca', 'BcaC01g00537' => 'bca', 'BcaC01g01174' => 'bca', 'BcaC01g03588' => 'bca', 'BcaC01g04056' => 'bca', 'BcaC03g14321' => 'bca', 'BcaC03g17691' => 'bca', 'BcaC04g20342' => 'bca', 'BcaC04g20343' => 'bca', 'BcaC04g21798' => 'bca', 'BcaC05g25409' => 'bca', 'BcaC05g28370' => 'bca', 'BcaC05g29770' => 'bca', 'BcaC05g29823' => 'bca', 'BcaC06g34064' => 'bca', 'BcaC06g36540' => 'bca', 'BcaC06g36608' => 'bca', 'BcaC07g39709' => 'bca', 'BcaC07g39710' => 'bca', 'BcaC09g48959' => 'bca', 'BcaC09g51738' => 'bca', 'BcaC09g51739' => 'bca', 'BcaNung00479' => 'bca', 'BolC1t00958H' => 'bol', 'BolC1t04367H' => 'bol', 'BolC1t04368H' => 'bol', 'BolC1t04369H' => 'bol', 'BolC2t07806H' => 'bol', 'BolC2t11770H' => 'bol', 'BolC3t14127H' => 'bol', 'BolC3t16423H' => 'bol', 'BolC3t16832H' => 'bol', 'BolC3t17370H' => 'bol', 'BolC3t20925H' => 'bol', 'BolC3t21235H' => 'bol', 'BolC5t30033H' => 'bol', 'BolC5t33173H' => 'bol', 'BolC5t34218H' => 'bol', 'BolC5t34700H' => 'bol', 'BolC7t40630H' => 'bol', 'BolC7t40710H' => 'bol', 'BolC7t44488H' => 'bol', 'BolC7t44670H' => 'bol', 'BolC7t46170H' => 'bol', 'BolC9t55615H' => 'bol', 'BolC9t57344H' => 'bol', 'BraA01t00802Z' => 'bra', 'BraA02t06101Z' => 'bra', 'BraA02t08766Z' => 'bra', 'BraA03t10242Z' => 'bra', 'BraA03t12910Z' => 'bra', 'BraA03t13308Z' => 'bra', 'BraA03t14956Z' => 'bra', 'BraA05t21791Z' => 'bra', 'BraA05t22506Z' => 'bra', 'BraA05t22847Z' => 'bra', 'BraA06t26776Z' => 'bra', 'BraA07t27906Z' => 'bra', 'BraA07t28472Z' => 'bra', 'BraA08t33921Z' => 'bra', 'BraA09t39760Z' => 'bra', 'BraA09t39761Z' => 'bra', 'C01p09960' => 'bna', 'C01p44060' => 'bna', 'C02p17080' => 'bna', 'C02p57000' => 'bna', 'C03p41410' => 'bna', 'C03p45550' => 'bna', 'C03p81170' => 'bna', 'C03p86350' => 'bna', 'C03p89250' => 'bna', 'C05p12860' => 'bna', 'C05p55520' => 'bna', 'C05p60460' => 'bna', 'C07p02210' => 'bna', 'C07p03180' => 'bna', 'C07p39650' => 'bna', 'C07p56940' => 'bna', 'C07p56980' => 'bna', 'C09p27390' => 'bna', 'C09p44710' => 'bna', 'CAN.G1241.15' => 'can', 'CAN.G134.14' => 'can', 'CAN.G3115.1' => 'can', 'CAN.G419.5' => 'can', 'CAN.G449.33' => 'can', 'CAN.G484.33' => 'can', 'CAN.G98.20' => 'can', 'CAN.G997.6' => 'can', 'CANSAT56G2031' => 'cansat', 'CANSAT56G2938' => 'cansat', 'CANSAT56G3383' => 'cansat', 'CANSAT78G0502' => 'cansat', 'CANSAT78G1957' => 'cansat', 'CARHR004260' => 'chi', 'CARHR081540' => 'chi', 'CARHR086820' => 'chi', 'CARHR095560' => 'chi', 'CARHR110120' => 'chi', 'CARHR237340' => 'chi', 'CARHR286220' => 'chi', 'Carub.0001s0411' => 'cru', 'Carub.0003s0645' => 'cru', 'Carub.0003s1163' => 'cru', 'Carub.0003s1994' => 'cru', 'Carub.0003s3396' => 'cru', 'Carub.0007s1104' => 'cru', 'Carub.0008s0884' => 'cru', 'Ca_01937_v3' => 'car', 'Ca_12333_v3' => 'car', 'Ca_12369_v3' => 'car', 'Ca_12955_v3' => 'car', 'Ca_21493_v3' => 'car', 'Ca_25615_v3' => 'car', 'Ca_28415_v3' => 'car', 'Ca_30359_v3' => 'car', 'CBR_g21834' => 'cbr', 'CBR_g3614' => 'cbr', 'CBR_g3764' => 'cbr', 'CBR_g9102' => 'cbr', 'Cc03_g01920' => 'ccan', 'Cc03_g04310' => 'ccan', 'Cc06_g08920' => 'ccan', 'Cc06_g11070' => 'ccan', 'Cc11_g01080' => 'ccan', 'CDE02G3502' => 'cde', 'CDE02G3921' => 'cde', 'CDE04G0762' => 'cde', 'CDE04G3691' => 'cde', 'CDE05G2766' => 'cde', 'CDE05G2840' => 'cde', 'CDE06G2279' => 'cde', 'CDE07G0219' => 'cde', 'CDE07G1010' => 'cde', 'CDE08G0604' => 'cde', 'CDE08G1566' => 'cde', 'Cfa003117' => 'cfa', 'Cfa003336' => 'cfa', 'Cfa010945' => 'cfa', 'Cfa015385' => 'cfa', 'Ciclev10000650m.g' => 'ccl', 'Ciclev10004703m.g' => 'ccl', 'Ciclev10008497m.g' => 'ccl', 'Ciclev10008570m.g' => 'ccl', 'Ciclev10031618m.g' => 'ccl', 'CiPaw.01G148600' => 'cil', 'CiPaw.02G082800' => 'cil', 'CiPaw.03G218900' => 'cil', 'CiPaw.03G240200' => 'cil', 'CiPaw.04G169600' => 'cil', 'CiPaw.13G015500' => 'cil', 'CiPaw.15G001400' => 'cil', 'ClCG01G008020' => 'cla', 'ClCG03G015810' => 'cla', 'ClCG05G026980' => 'cla', 'ClCG06G005130' => 'cla', 'ClCG06G010830' => 'cla', 'COL.COLO4_13868' => 'col', 'COL.COLO4_18229' => 'col', 'COL.COLO4_18230' => 'col', 'COL.COLO4_18231' => 'col', 'COL.COLO4_20723' => 'col', 'COL.COLO4_33126' => 'col', 'COL.COLO4_35182' => 'col', 'Cpa.g.sc16.172' => 'cpa', 'Cpa.g.sc169.35' => 'cpa', 'Cpa.g.sc257.4' => 'cpa', 'Cpa.g.sc7.249' => 'cpa', 'Cpa.g.sc75.68' => 'cpa', 'Cre01.g051000' => 'cre', 'Cre03.g172550' => 'cre', 'Cre12.g558100' => 'cre', 'Cre15.g635350' => 'cre', 'Cre16.g685900' => 'cre', 'CsaV3_1G029740' => 'csa', 'CsaV3_1G040200' => 'csa', 'CsaV3_5G021840' => 'csa', 'CsaV3_5G036920' => 'csa', 'CsaV3_6G017170' => 'csa', 'CsaV3_UNG060470' => 'csa', 'CsaV3_UNG110790' => 'csa', 'CSS0009692' => 'camsi', 'CSS0017079' => 'camsi', 'CSS0019283' => 'camsi', 'CSS0020528' => 'camsi', 'CSS0020792' => 'camsi', 'CSS0034341' => 'camsi', 'CSS0034707' => 'camsi', 'CSS0034880' => 'camsi', 'CSS0036548' => 'camsi', 'CSS0039144' => 'camsi', 'CSS0043025' => 'camsi', 'CSS0045829' => 'camsi', 'CSS0050135' => 'camsi', 'DCAR_009212' => 'dca', 'DCAR_010683' => 'dca', 'DCAR_023284' => 'dca', 'DCAR_023487' => 'dca', 'DCAR_024066' => 'dca', 'DCAR_027075' => 'dca', 'DCAR_029712' => 'dca', 'DCAR_030016' => 'dca', 'DCAR_030017' => 'dca', 'Dinv17653' => 'din', 'Dinv18829' => 'din', 'Dinv32012' => 'din', 'Dinv36566' => 'din', 'Dinv41542' => 'din', 'Dinv42294' => 'din', 'Dinv44380' => 'din', 'Duzib052G0726' => 'dzi', 'Duzib128G0348' => 'dzi', 'Duzib151G0063' => 'dzi', 'Duzib168G0050' => 'dzi', 'Duzib168G1933' => 'dzi', 'Duzib187G1143' => 'dzi', 'Duzib212G0808' => 'dzi', 'Duzib248G1061' => 'dzi', 'ECA234G1521' => 'eca', 'ECA234G3201' => 'eca', 'ECA234G3716' => 'eca', 'ECA240G2672' => 'eca', 'ECA240G4511' => 'eca', 'EL10Ac2g02719' => 'bvu', 'EL10Ac3g06602' => 'bvu', 'EL10Ac4g09194' => 'bvu', 'EL10Ac8g18595' => 'bvu', 'EL10Ac8g19271' => 'bvu', 'EL10Ac9g23006' => 'bvu', 'Eucgr.B01318' => 'egr', 'Eucgr.C01117' => 'egr', 'Eucgr.C03665' => 'egr', 'Eucgr.G03214' => 'egr', 'Eucgr.J00342' => 'egr', 'FAN03G1836' => 'fan', 'FAN06G0539' => 'fan', 'FAN07G0825' => 'fan', 'FAN07G2352' => 'fan', 'FAN08G1146' => 'fan', 'FAN10G4100' => 'fan', 'FAN12G0276' => 'fan', 'FAN12G1449' => 'fan', 'FAN17G0618' => 'fan', 'FAN17G3001' => 'fan', 'FAN19G0832' => 'fan', 'FAN19G2956' => 'fan', 'FAN23G1511' => 'fan', 'FAN23G1612' => 'fan', 'FAN26G0954' => 'fan', 'FAN26G2108' => 'fan', 'FAN26G2110' => 'fan', 'FAN28G2342' => 'fan', 'FAN28G2714' => 'fan', 'FvH4_1g03880' => 'fve', 'FvH4_1g06990' => 'fve', 'FvH4_4g18050' => 'fve', 'FvH4_4g37250' => 'fve', 'FvH4_7g03650' => 'fve', 'Glyma.01G003800' => 'gma', 'Glyma.04G133900' => 'gma', 'Glyma.04G149600' => 'gma', 'Glyma.06G215400' => 'gma', 'Glyma.07G128100' => 'gma', 'Glyma.07G247300' => 'gma', 'Glyma.09G044700' => 'gma', 'Glyma.09G285500' => 'gma', 'Glyma.11G157700' => 'gma', 'Glyma.14G224500' => 'gma', 'Glyma.15G097800' => 'gma', 'Glyma.15G148200' => 'gma', 'Glyma.17G026500' => 'gma', 'Glyma.20G000400' => 'gma', 'Glyma.20G101000' => 'gma', 'Gohir.A01G050400' => 'ghi', 'Gohir.A02G133500' => 'ghi', 'Gohir.A03G015200' => 'ghi', 'Gohir.A03G112250' => 'ghi', 'Gohir.A03G214700' => 'ghi', 'Gohir.A04G092700' => 'ghi', 'Gohir.A04G109456' => 'ghi', 'Gohir.A05G019000' => 'ghi', 'Gohir.A05G028900' => 'ghi', 'Gohir.A05G283300' => 'ghi', 'Gohir.A05G331200' => 'ghi', 'Gohir.A06G071100' => 'ghi', 'Gohir.A09G062500' => 'ghi', 'Gohir.A09G212950' => 'ghi', 'Gohir.A09G239000' => 'ghi', 'Gohir.A10G164200' => 'ghi', 'Gohir.A10G185000' => 'ghi', 'Gohir.A12G039001' => 'ghi', 'Gohir.A13G062400' => 'ghi', 'Gohir.D01G051344' => 'ghi', 'Gohir.D01G144700' => 'ghi', 'Gohir.D02G084550' => 'ghi', 'Gohir.D02G134333' => 'ghi', 'Gohir.D02G138150' => 'ghi', 'Gohir.D02G194701' => 'ghi', 'Gohir.D03G171100' => 'ghi', 'Gohir.D04G149300' => 'ghi', 'Gohir.D05G020100' => 'ghi', 'Gohir.D05G030400' => 'ghi', 'Gohir.D05G284300' => 'ghi', 'Gohir.D05G294200' => 'ghi', 'Gohir.D06G069800' => 'ghi', 'Gohir.D07G076600' => 'ghi', 'Gohir.D07G102950' => 'ghi', 'Gohir.D07G106300' => 'ghi', 'Gohir.D08G102700' => 'ghi', 'Gohir.D09G061400' => 'ghi', 'Gohir.D09G074001' => 'ghi', 'Gohir.D09G239900' => 'ghi', 'Gohir.D10G149400' => 'ghi', 'Gohir.D10G170500' => 'ghi', 'Gohir.D10G205550' => 'ghi', 'Gohir.D11G103600' => 'ghi', 'Gohir.D11G146301' => 'ghi', 'Gohir.D11G158000' => 'ghi', 'Gohir.D13G059500' => 'ghi', 'Gorai.001G256000' => 'gra', 'Gorai.002G160700' => 'gra', 'Gorai.004G077200' => 'gra', 'Gorai.006G076000' => 'gra', 'Gorai.006G163700' => 'gra', 'Gorai.006G262700' => 'gra', 'Gorai.007G151000' => 'gra', 'Gorai.009G020400' => 'gra', 'Gorai.009G030600' => 'gra', 'Gorai.009G298900' => 'gra', 'Gorai.010G081400' => 'gra', 'Gorai.010G214700' => 'gra', 'Gorai.011G190400' => 'gra', 'Gorai.012G135800' => 'gra', 'Gorai.013G067300' => 'gra', 'GSVIVG01015236001' => 'vvi', 'GSVIVG01015488001' => 'vvi', 'GSVIVG01017761001' => 'vvi', 'GSVIVG01028020001' => 'vvi', 'GSVIVG01034373001' => 'vvi', 'GSVIVG01036648001' => 'vvi', 'HanXRQChr01g0001671' => 'han', 'HanXRQChr03g0060541' => 'han', 'HanXRQChr03g0080961' => 'han', 'HanXRQChr03g0083081' => 'han', 'HanXRQChr09g0240301' => 'han', 'HanXRQChr10g0309811' => 'han', 'HanXRQChr10g0316771' => 'han', 'HanXRQChr10g0319121' => 'han', 'HanXRQChr12g0356471' => 'han', 'HanXRQChr13g0411281' => 'han', 'HanXRQChr16g0512761' => 'han', 'HanXRQChr16g0526101' => 'han', 'HanXRQChr17g0565371' => 'han', 'Haze_01200' => 'cav', 'Haze_03001' => 'cav', 'Haze_25627' => 'cav', 'Haze_25883' => 'cav', 'Haze_26468' => 'cav', 'Haze_26970' => 'cav', 'Hma1.2p1_0018F.1_g012770' => 'hma', 'Hma1.2p1_0018F.1_g012780' => 'hma', 'Hma1.2p1_0078F.1_g040530' => 'hma', 'Hma1.2p1_0338F.1_g129590' => 'hma', 'Hma1.2p1_0663F.1_g198800' => 'hma', 'Hma1.2p1_0665F.1_g199250' => 'hma', 'Hma1.2p1_0665F.1_g199260' => 'hma', 'Hma1.2p1_0665F.1_g199270' => 'hma', 'Hma1.2p1_0798F.1_g219550' => 'hma', 'Hma1.2p1_0798F.1_g219560' => 'hma', 'Hma1.2p1_1730F.1_g299690' => 'hma', 'Hma1.2p1_2670F.1_g326610' => 'hma', 'Hma1.2p1_2676F.1_g326720' => 'hma', 'HPP92_000401' => 'vpl', 'HPP92_000402' => 'vpl', 'HPP92_001699' => 'vpl', 'HPP92_002519' => 'vpl', 'HPP92_009167' => 'vpl', 'HPP92_019957' => 'vpl', 'HPP92_019967' => 'vpl', 'HPP92_019968' => 'vpl', 'HPP92_025986' => 'vpl', 'HPP92_026003' => 'vpl', 'HPP92_026004' => 'vpl', 'Hund09153' => 'sun', 'Hund13389' => 'sun', 'Hund24894' => 'sun', 'Hund25846' => 'sun', 'Lalb_Chr02g0143701' => 'lal', 'Lalb_Chr08g0234841' => 'lal', 'Lalb_Chr10g0094731' => 'lal', 'Lalb_Chr12g0196591' => 'lal', 'Lalb_Chr13g0303571' => 'lal', 'Lalb_Chr14g0375301' => 'lal', 'Lalb_Chr15g0083501' => 'lal', 'Lalb_Chr17g0337691' => 'lal', 'Lalb_Chr20g0115971' => 'lal', 'Lalb_Chr22g0349761' => 'lal', 'Lalb_Chr23g0275241' => 'lal', 'Lalb_Chr25g0281741' => 'lal', 'Lj1g0006107' => 'lja', 'Lj2g0000322' => 'lja', 'Lj2g0017649' => 'lja', 'Lj3A817G85' => 'lonja', 'Lj3C817G11' => 'lonja', 'Lj3C819G5' => 'lonja', 'Lj3g0017509' => 'lja', 'Lj4A310G27' => 'lonja', 'Lj4g0016454' => 'lja', 'Lj6A707G47' => 'lonja', 'Lj6C675G15' => 'lonja', 'Lj6C676T4' => 'lonja', 'Lj6g0003576' => 'lja', 'Lj7A634G25' => 'lonja', 'Lj7A672G59' => 'lonja', 'Lj7C634T0' => 'lonja', 'Lj9A657G26' => 'lonja', 'Lsat_1_v5_gn_4_27640' => 'lsa', 'Lsat_1_v5_gn_5_53081' => 'lsa', 'Lsat_1_v5_gn_5_64200' => 'lsa', 'Lsat_1_v5_gn_5_97961' => 'lsa', 'Lsat_1_v5_gn_7_37861' => 'lsa', 'Lsat_1_v5_gn_8_57261' => 'lsa', 'Lsat_1_v5_gn_9_85880' => 'lsa', 'Manes.03G030932' => 'mes', 'Manes.03G030998' => 'mes', 'Manes.03G031196' => 'mes', 'Manes.03G031300' => 'mes', 'Manes.03G031500' => 'mes', 'Manes.03G034800' => 'mes', 'Manes.03G195300' => 'mes', 'Manes.04G156800' => 'mes', 'Manes.04G162200' => 'mes', 'Manes.06G037800' => 'mes', 'Manes.11G000800' => 'mes', 'Manes.14G129300' => 'mes', 'Manes.16G104100' => 'mes', 'Mapoly0014s0152' => 'mpo', 'Mapoly0032s0165' => 'mpo', 'Mapoly0078s0032' => 'mpo', 'Mapoly0090s0014' => 'mpo', 'MBI01_g02266_MAGBIO' => 'mbi', 'MBI01_g07125_MAGBIO' => 'mbi', 'MBI01_g11880_MAGBIO' => 'mbi', 'MBI01_g37953_MAGBIO' => 'mbi', 'MBI01_g37954_MAGBIO' => 'mbi', 'MBI04_g11707_MAGBIO' => 'mbi', 'MBI06_g09196_MAGBIO' => 'mbi', 'MBI14_g45316_MAGBIO' => 'mbi', 'MBI19_g20786_MAGBIO' => 'mbi', 'MBI19_g29220_MAGBIO' => 'mbi', 'MBI19_g36133_MAGBIO' => 'mbi', 'MCO01G705' => 'mco', 'MCO03G234' => 'mco', 'MCO05G072' => 'mco', 'MCO05G494' => 'mco', 'MCO11G781' => 'mco', 'MD02G1037100' => 'mdo', 'MD02G1074300' => 'mdo', 'MD07G1046100' => 'mdo', 'MD13G1002200' => 'mdo', 'MD13G1168500' => 'mdo', 'MD15G1177300' => 'mdo', 'MD15G1203800' => 'mdo', 'MD16G1168900' => 'mdo', 'Medtr1g113940' => 'mtr', 'Medtr2g054880' => 'mtr', 'Medtr2g436780' => 'mtr', 'Medtr3g013960' => 'mtr', 'Medtr4g119900' => 'mtr', 'Medtr6g091770' => 'mtr', 'MELO3C005078.2' => 'cme', 'MELO3C012491.2' => 'cme', 'MELO3C015447.2' => 'cme', 'MELO3C021330.2' => 'cme', 'MELO3C026636.2' => 'cme', 'Migut.E00667' => 'egut', 'Migut.G00162' => 'egut', 'Migut.J00445' => 'egut', 'Migut.K00470' => 'egut', 'Migut.N01856' => 'egut', 'MSTRG.10095' => 'ama', 'MSTRG.10684' => 'ama', 'MSTRG.13669' => 'ama', 'MSTRG.16980' => 'ama', 'MSTRG.19531' => 'ama', 'MSTRG.2076' => 'ama', 'MSTRG.3915' => 'ama', 'MSTRG.6041' => 'ama', 'Nitab4.5_0000010g0090' => 'nta', 'Nitab4.5_0000540g0200' => 'nta', 'Nitab4.5_0000570g0130' => 'nta', 'Nitab4.5_0000713g0160' => 'nta', 'Nitab4.5_0001233g0100' => 'nta', 'Nitab4.5_0001904g0120' => 'nta', 'Nitab4.5_0002294g0050' => 'nta', 'Nitab4.5_0002605g0060' => 'nta', 'Nitab4.5_0002838g0160' => 'nta', 'Nitab4.5_0003466g0120' => 'nta', 'Nitab4.5_0004237g0010' => 'nta', 'Nitab4.5_0005420g0030' => 'nta', 'Nitab4.5_0005471g0010' => 'nta', 'Nitab4.5_0007297g0020' => 'nta', 'Nitab4.5_0012635g0020' => 'nta', 'Nn2g11937' => 'nnu', 'Nn3g21443' => 'nnu', 'Nn4g25167' => 'nnu', 'Nn4g25839' => 'nnu', 'Nn7g36776' => 'nnu', 'Nn8g38916' => 'nnu', 'Oeu006339.1' => 'oeu', 'Oeu013071.1' => 'oeu', 'Oeu013072.1' => 'oeu', 'Oeu013078.1' => 'oeu', 'Oeu027725.1' => 'oeu', 'Oeu027922.1' => 'oeu', 'Oeu029702.2' => 'oeu', 'Oeu034106.1' => 'oeu', 'Oeu049538.1' => 'oeu', 'Oeu052131.2' => 'oeu', 'Oeu058053.1' => 'oeu', 'Os04g0677066' => 'osa', 'Os06g0142800' => 'osa', 'Os07g0640000' => 'osa', 'Os07g0671700' => 'osa', 'Os09g0359800' => 'osa', 'Os10g0489100' => 'osa', 'Peaxi162Scf00045g00323' => 'pax', 'Peaxi162Scf00082g00019' => 'pax', 'Peaxi162Scf00086g00431' => 'pax', 'Peaxi162Scf00086g00432' => 'pax', 'Peaxi162Scf00361g00045' => 'pax', 'Peaxi162Scf00498g00126' => 'pax', 'Peaxi162Scf00576g00011' => 'pax', 'Peaxi162Scf00576g00012' => 'pax', 'Peaxi162Scf01573g00010' => 'pax', 'PGR004G2298' => 'pgr', 'PGR031G2129' => 'pgr', 'PGR031G3760' => 'pgr', 'PGR044G2312' => 'pgr', 'PGR102G0199' => 'pgr', 'PGSC0003DMG400000343' => 'stu', 'PGSC0003DMG400004710' => 'stu', 'PGSC0003DMG400008431' => 'stu', 'PGSC0003DMG400008452' => 'stu', 'PGSC0003DMG400023146' => 'stu', 'PGSC0003DMG401003285' => 'stu', 'Phvul.003G001000' => 'pvu', 'Phvul.003G105500' => 'pvu', 'Phvul.004G172200' => 'pvu', 'Phvul.005G024700' => 'pvu', 'Phvul.009G005200' => 'pvu', 'Phvul.009G198900' => 'pvu', 'Phvul.009G248200' => 'pvu', 'Potri.001G030200' => 'ptr', 'Potri.006G149400' => 'ptr', 'Potri.007G000300' => 'ptr', 'Potri.008G222700' => 'ptr', 'Potri.010G014600' => 'ptr', 'Potri.014G004000' => 'ptr', 'Potri.018G067200' => 'ptr', 'Potri.018G071200' => 'ptr', 'Pp3c10_9950' => 'ppa', 'Pp3c11_14160' => 'ppa', 'Pp3c14_22470' => 'ppa', 'Pp3c15_2560' => 'ppa', 'Pp3c1_36400' => 'ppa', 'Pp3c1_7870' => 'ppa', 'Pp3c22_9680' => 'ppa', 'Pp3c4_1810' => 'ppa', 'Pp3c9_1560' => 'ppa', 'PRCOL_00004012' => 'pco', 'PRCOL_00004311' => 'pco', 'PRCOL_00005078' => 'pco', 'PRCOL_00006047' => 'pco', 'Prupe.1G136600' => 'ppe', 'Prupe.1G350300' => 'ppe', 'Prupe.2G042600' => 'ppe', 'Prupe.7G213600' => 'ppe', 'Prupe.7G238300' => 'ppe', 'Psat0s3456g0080' => 'psa', 'Psat0s3456g0120' => 'psa', 'Psat1g026600' => 'psa', 'Psat1g035560' => 'psa', 'Psat1g049800' => 'psa', 'Psat3g060640' => 'psa', 'Psat3g192680' => 'psa', 'Psat4g027520' => 'psa', 'Psat4g189800' => 'psa', 'Psat5g222040' => 'psa', 'Psat5g267720' => 'psa', 'Psat6g100480' => 'psa', 'PSO170G4892' => 'pso', 'PSO170G5774' => 'pso', 'PSO210G0623' => 'pso', 'PSO210G5853' => 'pso', 'PSO210G7603' => 'pso', 'PSO302G0100' => 'pso', 'PSO339G5515' => 'pso', 'PSO384G1239' => 'pso', 'PSO455G0187' => 'pso', 'QL01p000726' => 'qlo', 'QL02p063169' => 'qlo', 'QL02p087443' => 'qlo', 'QL04p019592' => 'qlo', 'QL04p019730' => 'qlo', 'QL04p019987' => 'qlo', 'QL04p020223' => 'qlo', 'QL04p020506' => 'qlo', 'QL06p008928' => 'qlo', 'RcHm_v2.0_Chr1g0326421' => 'rch', 'RcHm_v2.0_Chr1g0326461' => 'rch', 'RcHm_v2.0_Chr1g0326471' => 'rch', 'RcHm_v2.0_Chr1g0326481' => 'rch', 'RcHm_v2.0_Chr2g0089261' => 'rch', 'RcHm_v2.0_Chr2g0089341' => 'rch', 'RcHm_v2.0_Chr2g0092941' => 'rch', 'RcHm_v2.0_Chr4g0422261' => 'rch', 'RcHm_v2.0_Chr4g0447051' => 'rch', 'Rhsim01G0078300' => 'rsi', 'Rhsim02G0009000' => 'rsi', 'Rhsim03G0246100' => 'rsi', 'Rhsim04G0222300' => 'rsi', 'Rhsim05G0034500' => 'rsi', 'Rhsim05G0035500' => 'rsi', 'Rhsim07G0068700' => 'rsi', 'RhsimUnG0102700' => 'rsi', 'Sabra01G0021700' => 'sbr', 'Sabra06G0118000' => 'sbr', 'Sabra06G0118100' => 'sbr', 'Sabra07G0000300' => 'sbr', 'Sabra07G0000400' => 'sbr', 'Sabra18G0059900' => 'sbr', 'Sabra18G0062100' => 'sbr', 'SalBow1G6947' => 'sbo', 'SalBow2G1467' => 'sbo', 'SalBow6G2427' => 'sbo', 'SalBow6G5029' => 'sbo', 'SalBow8G1488' => 'sbo', 'Sc10g0004550' => 'sci', 'Sc10g0006650' => 'sci', 'Sc13g0003460' => 'sci', 'Sc14g0000780' => 'sci', 'Sc18g0000810' => 'sci', 'Sc19g0005320' => 'sci', 'Sed0016171' => 'sed', 'Sed0017460' => 'sed', 'Sed0022714' => 'sed', 'Sed0022843' => 'sed', 'Sed0023961' => 'sed', 'Sed0024544' => 'sed', 'Sed0025603' => 'sed', 'Sed0027021' => 'sed', 'SEGI_06396' => 'sgi', 'SEGI_10801' => 'sgi', 'SEGI_12073' => 'sgi', 'SEGI_15948' => 'sgi', 'SEGI_25298' => 'sgi', 'SEGI_26657' => 'sgi', 'SEGI_31339' => 'sgi', 'SEGI_31384' => 'sgi', 'SEGI_34036' => 'sgi', 'SEGI_36545' => 'sgi', 'SEGI_39413' => 'sgi', 'SEGI_41196' => 'sgi', 'SGA_v2.0_scaffold10G05206' => 'sas', 'SGA_v2.0_scaffold127G33971' => 'sas', 'SGA_v2.0_scaffold147G36295' => 'sas', 'SGA_v2.0_scaffold232G43485' => 'sas', 'SGA_v2.0_scaffold43G16282' => 'sas', 'SGA_v2.0_scaffold8G04290' => 'sas', 'SHI02817' => 'shi', 'SHI02818' => 'shi', 'SMO111G0077' => 'smo', 'SMO118G0255' => 'smo', 'SMO118G0363' => 'smo', 'SMO145G0020' => 'smo', 'SMO145G0055' => 'smo', 'SMO347G0013' => 'smo', 'SMO359G0001' => 'smo', 'SMO359G0002' => 'smo', 'Solyc01g096550.3' => 'sly', 'Solyc04g008860.4' => 'sly', 'Solyc05g054240.3' => 'sly', 'Solyc07g032240.3' => 'sly', 'Solyc08g067050.3' => 'sly', 'Solyc12g008760.3' => 'sly', 'Solyc12g099560.2' => 'sly', 'Sopen01g040280' => 'spe', 'Sopen03g027930' => 'spe', 'Sopen04g004040' => 'spe', 'Sopen05g032730' => 'spe', 'Sopen07g015900' => 'spe', 'Sopen08g021000' => 'spe', 'Sopen12g003690' => 'spe', 'Sopen12g034240' => 'spe', 'Sp2g19400' => 'spa', 'Sp3g05880' => 'spa', 'Sp3g10490' => 'spa', 'Sp3g18060' => 'spa', 'Sp3g33020' => 'spa', 'Sp6g16390' => 'spa', 'Sp7g27370' => 'spa', 'TAR362G0702' => 'tar', 'TAR365G0782' => 'tar', 'TAR383G0926' => 'tar', 'TAR624G0160' => 'tar', 'TAR624G0250' => 'tar', 'TAR624G1111' => 'tar', 'TAR625G1221' => 'tar', 'TAR625G1440' => 'tar', 'TAR626G0175' => 'tar', 'TAR629G0248' => 'tar', 'TAR633G0611' => 'tar', 'TAR633G2471' => 'tar', 'TAR636G1220' => 'tar', 'TAR636G1882' => 'tar', 'TAR636G2666' => 'tar', 'THA.LOC104799324' => 'tha', 'THA.LOC104802688' => 'tha', 'THA.LOC104809006' => 'tha', 'THA.LOC104809024' => 'tha', 'THA.LOC104814604' => 'tha', 'THA.LOC104818926' => 'tha', 'THA.LOC104820028' => 'tha', 'THA.LOC104826510' => 'tha', 'Thecc.02G153600' => 'tca', 'Thecc.04G284900' => 'tca', 'Thecc.09G093100' => 'tca', 'Thecc.09G121100' => 'tca', 'Thecc.10G145300' => 'tca', 'Thhalv10002025m.g' => 'esa', 'Thhalv10003986m.g' => 'esa', 'Thhalv10013798m.g' => 'esa', 'Thhalv10020338m.g' => 'esa', 'Thhalv10020486m.g' => 'esa', 'Thhalv10020769m.g' => 'esa', 'Thhalv10026945m.g' => 'esa', 'TPR.G13846' => 'tpr', 'TPR.G1436' => 'tpr', 'TPR.G1683' => 'tpr', 'TPR.G27997' => 'tpr', 'TPR.G3204' => 'tpr', 'TPR.G32797' => 'tpr', 'TPR.G35492' => 'tpr', 'TPR.G35537' => 'tpr', 'TPR.G4092' => 'tpr', 'TPR.G4124' => 'tpr', 'TWI09G1119' => 'twi', 'TWI15G0515' => 'twi', 'TWI32G0239' => 'twi', 'TWI32G0718' => 'twi', 'TWI34G1898' => 'twi', 'TWI63G1300' => 'twi', 'TWI73G0330' => 'twi', 'TWI77G0329' => 'twi', 'unitig_0.g2299' => 'ugi', 'unitig_0.g2300' => 'ugi', 'unitig_699.g19641' => 'ugi', 'unitig_748.g8732' => 'ugi', 'unitig_749.g14226' => 'ugi', 'unitig_78.g29620' => 'ugi', 'vmacro06183' => 'vma', 'vmacro08153' => 'vma', 'vmacro10810' => 'vma', 'vmacro13765' => 'vma', 'vmacro15235' => 'vma', 'vmacro16004' => 'vma', 'vmacro20652' => 'vma', 'VMungo0464G2028' => 'vmu', 'VMungo1080G1346' => 'vmu', 'VMungo1215G0799' => 'vmu', 'VMungo1215G1558' => 'vmu', 'VMungo1309G0730' => 'vmu', 'VMungo1309G0809' => 'vmu', 'VMungo1383G0150' => 'vmu', 'VMungo1383G1828' => 'vmu', 'Zm00001eb045210' => 'zma', 'Zm00001eb111180' => 'zma', 'Zm00001eb221760' => 'zma', 'Zm00001eb270370' => 'zma', 'Zm00001eb307260' => 'zma', 'Zm00001eb310620' => 'zma', 'Zm00001eb330380' => 'zma', 'Zm00001eb433710' => 'zma' ) $gf_id = 'HOM05D000639' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000639' ) $data_identifier = 'HOM05D000639' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 3, 'ach' => (int) 15, 'amhyb' => (int) 9, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 31, 'bol' => (int) 23, 'bra' => (int) 16, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 11, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 46, 'gra' => (int) 15, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 13, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 12, 'lja' => (int) 6, 'lonja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 9, 'qlo' => (int) 9, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 12, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433710' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1